You probably already read the excellent article “Berkheimer, the Administrative Procedure Act, and PTO Motions to Vacate PTAB § 101 Decisions” by Doerre and Boundy.
The article references two recent decisions by the PTAB applying Berkheimer. Copies of those PTAB opinions are available below:
Ex parte Bhogal, appeal no. 2016-008742, (PTAB Mar. 19, 2018)
Ex parte Galloway, appeal no. 2017-004696, (PTAB May 24, 2018).
UPDATE JULY 20, 2018:
Here’s another PTAB decision applying Berkheimer, mentioned in the comments section for the above article:
Ex Parte Young, appeal no. 2017-006731, (PTAB June 29, 2018).